16.1. cppdefs.h#
This file defines the CPP keys that are used by the the C-preprocessor when compiling CROCO. The C-preprocessor selects the different parts of the Fortran code which needs to be compiled depending on the defined CPP options. These options are separated in two parts: the basic option keys in cppdefs.h and the advanced options keys in cppdefs_dev.h.
CPP keys define the case: test case, realistic case, as well as the numerical schemes, parameterizations, and modules used, and the forcing and boundary conditions.
Configuration
CPP options |
Description |
|---|---|
BASIN |
Must be defined for running the Basin example |
CANYON_A |
Must be defined for running the Canyon_A example |
CANYON_B |
Must be defined for running the Canyon_B example |
EQUATOR |
Must be defined for running the Equator example |
GRAV_ADJ |
Must be defined for running the Gravitational Adjustment example |
ACOUSTIC |
Must be defined for running the accoustic example |
INNERSHELF |
Must be defined for running the Inner Shelf example |
OVERFLOW |
Must be defined for running the Gravitational/Overflow example |
SEAMOUNT |
Must be defined for running the Seamount example |
SHELFRONT |
Must be defined for running the Shelf Front example |
SOLITON |
Must be defined for running the Equatorial Rossby Wave example |
UPWELLING |
Must be defined for running the Upwelling example |
INTERNAL |
Must be defined for running the Internal tides example |
VORTEX |
Must be defined for running the Baroclinic Vortex example |
JET |
Must be defined for running the Jet example |
THACKER |
Must be defined for running the Thacker example |
TANK |
Must be defined for running the Tank example |
S2DV |
Must be defined for running the S2DV example |
RIP |
Must be defined for running the Rip current example |
SHOREFACE |
Must be defined for running the Shoreface example |
SWASH |
Must be defined for running the Swash example |
REGIONAL |
Must be defined if running realistic regional simulations |
Prallelisation
CPP options |
Description |
|---|---|
OPENMP |
Activate Open-MP parallelization protocol |
MPI |
Activate MPI parallelization protocol |
PARALLEL_FILES |
Activate parallel I/O writing |
XIOS |
Use external server for output |
AUTOTILING |
Activate subdomains partitionning optimization |
Nesting
CPP options |
Description |
|---|---|
AGRIF |
Activate nesting capabilities (1-WAY by default) |
AGRIF_2WAY |
Activate 2-WAY nesting (update parent solution by child solution) |
Open Boundary Conditions
CPP options |
Description |
|---|---|
OBC_EAST |
Open eastern boundary |
OBC_WEST |
Open western boundary |
OBC_SOUTH |
Open southern boundary |
OBC_NORTH |
Open northern boundary |
Tides
CPP options |
Description |
|---|---|
TIDES |
Activate tidal forcing at open boundaries |
SSH_TIDES |
process and use tidal sea level data |
UV_TIDES |
process and use tidal current data |
TIDERAMP |
Apply ramping on tidal forcing (1 day) at initialization
Warning! This should be undefined if restarting the model
|
Applications
CPP options |
Description |
|---|---|
BIOLOGY |
Activate biogeochemical modeling |
FLOATS |
Activate floats |
STATIONS |
Store high frequency model outputs at stations |
PASSIVE_TRACER |
Add a passive tracer |
BBL |
Activate bottom boundary layer parametrization |
SEDIMENT |
Activate sediment modeling (USGS model) |
MUSTANG |
Activate sediment modeling (MUSTANG model) |
Grid Configuration
CPP options |
Description |
|---|---|
CURVGRID |
Activate curvilinear coordinate transformation |
SPHERICAL |
Activate longitude/latitude grid positioning |
MASKING |
Activate land masking |
WET_DRY |
Activate wetting-Drying scheme |
NEW_S_COORD |
Choose new vertical S-coordinates |
Model Dynamics
CPP options |
Description |
|---|---|
SOLVE3D |
Solve 3D primitive equations |
UV_COR |
Activate Coriolis terms |
UV_ADV |
Activate advection terms |
NBQ |
Activate non-boussinesq option |
Lateral Momentum Advection
CPP options |
Description |
|---|---|
DV_UP3 |
Activate 3rd-order upstream biased advection scheme |
UV_HADV_UP5 |
Activate 5th-order upstream biased advection scheme |
UV_HADV_C2 |
Activate 2nd-order centred advection scheme
(should be used with explicit momentum mixing)
|
UV_HADV_C4 |
Activate 4th-order centred advection scheme
(should be used with explicit momentum mixing)
|
UV_HADV_C6 |
Activate 6th-order centred advection scheme
(should be used with explicit momentum mixing)
|
UV_HADV_WENO5 |
Activate WENO 5th-order advection scheme |
UV_HADV_TVD |
Activate Total Variation Diminushing scheme |
Lateral Momentum Mixing
CPP options |
Description |
|---|---|
UV_MIX_GEO |
Activate mixing on geopotential (constant depth) surfaces |
UV_MIX_S |
Activate mixing on iso-sigma (constant sigma) surfaces |
UV_VIS2 |
Activate Laplacian horizontal mixing of momentum |
UV_VIS4 |
Activate Bilaplacian horizontal mixing of momentum |
UV_VIS_SMAGO |
Activate Smagorinsky parametrization of turbulent viscosity
(only with UV_VIS2)
|
UV_VIS_SMAGO3D |
Activate 3D Smagorinsky parametrization of turbulent viscosity |
Lateral Tracer Advection
CPP options |
Description |
|---|---|
TS_HADV_UP3 |
3rd-order upstream biased advection scheme |
TS_HADV_RSUP3 |
Split and rotated 3rd-order upstream biased advection scheme |
TS_HADV_UP5 |
5th-order upstream biased advection scheme |
TS_HADV_RSUP5 |
Split and rotated 5th-order upstream biased advection scheme
with reduced dispersion/diffustion
|
TS_HADV_C4 |
4th-order centred advection scheme |
TS_HADV_C6 |
Activate 6th-order centred advection scheme
|
TS_HADV_WENO5 |
5th-order WENOZ quasi-monotonic advection scheme for all tracers |
BIO_HADV_WENO5 |
5th-order WENOZ quasi-monotone advection scheme for
passive tracers (including biology and sediment tracers)
|
Lateral Tracer Mixing
CPP options |
Description |
|---|---|
TS_MIX_ISO |
Activate mixing along isopycnal (isoneutral) surfaces |
TS_MIX_GEO |
Activate mixing along geopotential surfaces |
TS_MIX_S |
Activate mixing along iso-sigma surfaces |
TS_DIF2 |
Activate Laplacian horizontal mixing of tracer |
TS_DIF4 |
Activate Bilaplacian horizontal mixing of tracer |
TS_MIX_IMP |
Activate stabilizing correction of rotated diffusion
(used with TS_MIX_ISO and TS_MIX_GEO)
|
Nudging
CPP options |
Description |
|---|---|
ZNUDGING |
Activate nudging layer for zeta. |
M2NUDGING |
Activate nudging layer for barotropic velocities. |
M3NUDGING |
Activate nudging layer for baroclinic velocities. |
TNUDGING |
Activate nudging layer for tracer. |
ROBUST_DIAG |
Activate strong tracer nudging in the interior for diagnostic simulations |
Vertical Mixing
CPP options |
Description |
|---|---|
BODYFORCE |
Apply surface and bottom stresses as body-forces |
ANA_VMIX |
Activate analytical viscosity/diffusivity coefficients |
BVF_MIXING |
Activate a simple mixing scheme based on the Brunt-Väisälä frequency |
LMD_MIXING |
Activate Large/McWilliams/Doney mixing (turbulent closure for
interior and planetary boundary layers) with following options
|
LMD_SKPP |
Activate surface boundary layer KPP mixing |
LMD_BKPP |
Activate bottom boundary layer KPP mixing |
LMD_RIMIX |
Activate shear instability interior mixing |
LMD_CONVEC |
Activate convection interior mixing |
LMD_DDMIX |
Activate double diffusion interior mixing |
LMD_NONLOCAL |
Activate nonlocal transport for SKPP |
GLS_MIXING |
Activate Generic Length Scale scheme as implemented by Warner et al.
(2005), default is k-kl (see below)
|
GLS_MIX2017 |
Activate Generic Length Scale scheme with a sligthly different
implementation (under test), default is k-epsilon (see below)
|
GLS_KKL |
Activate K-KL (K=TKE; L=length Scale) as in Mellor and Yamada [1974] |
GLS_KOMEGA |
Activate K-OMEGA (OMEGA=frequency of TKE dissipation) originating
from Kolmogorov [1942]
|
GLS_KEPSILON |
Activate K-EPSILON (EPSILON=TKE dissipation) as in Jones and Launder [1972] |
GLS_GEN |
Activate generic model of Umlauf and Burchard [2003] |
Equation of State
CPP options |
Description |
|---|---|
SALINITY |
Activate salinity as an active tracer |
NONLIN_EOS |
Activate nonlinear equation of state |
SPLIT_EOS |
Activate the split of the nonlinear equation of state in adiabatic
and compressible parts for reduction of pressure gradient errors
|
Surface Forcing
CPP options |
Description |
|---|---|
BULK_FLUX |
Activate bulk formulation for surface heat fluxes |
BULK_FAIRALL |
Choose Fairall formulation (default: COAMPS formulation) |
BULK_EP |
Add in bulk formulation for fresh water fluxes |
BULK_LW |
Add in long-wave radiation feedback from model SST |
BULK_SMFLUX |
Add in bulk formulation for surface momentum fluxes |
SST_SKIN |
Activate skin sst computation [Zeng and Beljaars, 2005] |
ONLINE |
Read native files and perform online interpolation on ROMS grid
(default cubic interpolation)
|
QCORRECTION |
Activate linearized bulk formulation providing heat flux correction
dQdSST for nudging towards model SST
|
SFLX_CORR |
Activate freshwater flux correction around model SSS |
ANA_DIURNAL_SW |
Activate analytical diurnal modulation of short wave radiations
(only appropriate if there is no diurnal cycle in data)
|
Coupling
CPP options |
Description |
|---|---|
OW_COUPLING |
Activate Ocean-Wave coupling |
OA_COUPLING |
Activate Ocean-Atmosphere coupling |
OA_MCT |
Use OASIS-MCT for coupling |
Sponge Layer
CPP options |
Description |
|---|---|
SPONGE |
Activate areas of enhanced viscosity and diffusivity
near lateral open boundaries.
|
SPONGE_GRID |
Automatic setting of the sponge width and value |
SPONGE_DIF2 |
Sponge on tracers (default) |
SPONGE_VIS2 |
Sponge on momentum (default) |
SPONGE_SED |
Sponge on sediment (default) |
Lateral forcing
CPP options |
Description |
|---|---|
CLIMATOLOGY |
Activate processing of 2D/3D climatological data for
nudging layers and open boundary forcing
|
ZCLIMATOLOGY |
Activate processing of sea level |
M2CLIMATOLOGY |
Activate processing of barotropic velocities |
M3CLIMATOLOGY |
Activate processing of baroclinic velocities |
TCLIMATOLOGY |
Activate processing of tracers |
ZNUDGING |
Activate nudging layer for sea level |
M2NUDGING |
Activate nudging layer for barotropic velocities |
M3NUDGING |
Activate nudging layer for baroclinic velocities |
TNUDGING |
Activate nudging layer for tracers |
ROBUST_DIAG |
Activate nudging over the whole domain |
FRC_BRY |
Activate processing of 1D/2D climatological or
simulation/reanalysis data at open boundary points
|
Z_FRC_BRY |
Activate open boundary forcing for sea level |
M2_FRC_BRY |
Activate open boundary forcing for barotropic velocities |
M3_FRC_BRY |
Activate open boundary forcing for baroclinic velocities |
T_FRC_BRY |
Activate open boundary forcing for tracers |
Bottom Forcing
CPP options |
Description |
|---|---|
ANA_BSFLUX |
Activate analytical bottom salinity flux (generally 0) |
ANA_BTFLUX |
Activate analytical bottom temperature flux (generally 0) |
Point Sources - Rivers
CPP options |
Description |
|---|---|
PSOURCE |
Activate point sources (rivers) |
ANA_PSOURCE |
use analytical vertical profiles for point sources
(set in set_global_definitions.h)
|
PSOURCE_NCFILE |
Read variable river transports in netcdf file |
PSOURCE_NCFILE_TS |
Read variable river concentration in netcdf file |
Open boundary conditions II
CPP options |
Description |
|---|---|
OBC_VOLCONS |
Activate mass conservation enforcement at open boundaries
(with OBC_M2ORLANSKI)
|
OBC_M2SPECIFIED |
Activate specified open boundary conditions for barotropic velocities |
OBC_M2ORLANSKI |
Activate radiative open boundary conditions for barotropic velocities |
OBC_M2FLATHER |
Activate Flather open boundary conditions for barotropic velocities |
OBC_M2CHARACT |
Activate open boundary conditions based on characteristic methods
barotropic velocities
|
OBC_M3SPECIFIED |
Activate specified open boundary conditions for baroclinic velocities |
OBC_M3ORLANSKI |
Activate radiative open boundary conditions for baroclinic velocities |
OBC_TSPECIFIED |
Activate specified open boundary conditions for tracers |
OBC_TORLANSKI |
Activate radiative open boundary conditions for tracers |
OBC_TUPWIND |
Activate upwind open boundary conditions for tracers |
I/O - Diagnostics
CPP options |
Description |
|---|---|
AVERAGES |
Process and output time-averaged data |
AVERAGES_K |
Process and output time-averaged vertical mixing |
DIAGNOSTICS_TS |
Store and output budget terms of the tracer equations |
DIAGNOSTICS_TS_ADV |
Choose advection rather than transport formulation for tracer budgets |
DIAGNOSTICS_TS_MLD |
Integrate tracer budgets over the mixed-layer depth |
DIAGNOSTICS_UV |
Store and output budget terms of the momentum equations |
XIOS |
Use XIOS IO server |
Biogeochemical models
CPP options |
Description |
|---|---|
PISCES |
Activate 24-component PISCES biogeochemical model |
BIO_NChlPZD |
Activate 5-component NPZD type model |
BIO_N2PZD2 |
Activate 7-component NPZD type model |
BIO_BioEBUS |
Activate 12-component NPZD type model |
Sediment Dynamics
CPP options |
Description |
|---|---|
ANA_SEDIMENT |
Set analytical sediment ripple and bed parameters |
ANA_WWAVE |
Analytical (constant) wave (hs,Tp,Dir) values. |
SUSPLOAD |
Activate suspended load transport |
BEDLOAD |
Activate bedload transport |
MORPHODYN |
Activate morphodynamics |
ANA_BPFLUX |
Set kinematic bottom flux of sediment tracer (if different from 0) |
SLOPE_NEMETH |
Nemeth formulation for avalanching ( Nemeth et al, 2006) |
SLOPE_LESSER |
Lesser formulation for avalanching [Lesser et al., 2004] |
BEDLOAD_SOULSBY |
Soulsby formulation for bedload ( Soulsby, R.L. and J.S. Damgaard, 2005) |
BEDLOAD_MPM |
Meyer-Peter-Muller formulation for bedload [Meyer-Peter and Müller, 1948] |
Bottom Boundary Layer
CPP options |
Description |
|---|---|
ANA_WWAVE |
Set analytical wave forcing |
ANA_BSEDIM |
Set analytical bed parameters (if SEDIMENT is undefined) |
Z0_BL |
Compute bedload roughness for ripple predictor and sediment purposes |
Z0_RIP |
Determine bedform roughness ripple height and ripple length
for sandy beds
|
Z0_BIO |
Determine (biogenic) bedform roughness ripple height and ripple
length for silty beds
|
Wave-Current interactions
CPP options |
Description |
|---|---|
MRL_WCI |
Set wave-current interaction model |
ANA_WWAVE |
Analytical values for waves |
WAVE_OFFLINE |
Set-wave offline (read from file) forcing |
WKB_WWAVE |
Set WKB wave model |
OW_COUPLING |
Set wave coupling for WWIII (to install separately) |
MRL_CEW |
Set current feedback on waves |
WKB_OBC_WEST |
Set East/West/North/South offshore forcing for WKB model |
ANA_BRY_WKB |
Analytical boundary wave foring (from croco.in) |
WAVE_BREAK_CT93 |
Thornton and Guza [1983] wave breaking (for WKB) |
WAVE_BREAK_TG86 |
Church and Thornton [1993] wave breaking (for WKB) |
WAVE_BREAK_TG86A |
Another Church and Thornton formulation |
WAVE_ROLLER |
Set wave roller model |
WAVE_STREAMING |
Set bottom wave streaming |
WAVE_FRICTION |
Set bottom friction in WKB model (used for streaming) |
WAVE_RAMP |
Set wave forcing ramp using wave_ramp parameter |